bionty.CellMarker#

class bionty.CellMarker(species='human', source=None, version=None, **kwargs)#

Bases: Bionty

Cell markers.

1. Cell Marker Ontology Edits of terms are coordinated and reviewed on: http://bio-bigdata.hrbmu.edu.cn/CellMarker/

Parameters:

  • species – name of Species entity.

  • source – The key of the source in the local.yml versions file. Get all available databases with bionty.display_available_sources.

  • version – The version of the ontology. Typically a date or an actual version. Get available versions with bionty.display_available_sources.

Attributes

source :class:`~<class 'property'>`#

Name of the source.

species :class:`~<class 'property'>`#

The name of Species Bionty.

version :class:`~<class 'property'>`#

The name of version entity Bionty.

Methods

df()#

DataFrame.

See ingestion: https://lamin.ai/docs/bionty-assets/ingest/cell-marker-2.0

Return type:

DataFrame